PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007138
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 392aa    MW: 43931.8 Da    PI: 5.712
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007138genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-17154203155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PGSC0003DMP400007138 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203
                           78*******************......55************************997 PP

2AP244.34.5e-14246296155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  PGSC0003DMP400007138 246 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 296
                           89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16154212IPR016177DNA-binding domain
PfamPF008474.1E-9154203IPR001471AP2/ERF domain
SMARTSM003805.1E-32155217IPR001471AP2/ERF domain
PROSITE profilePS5103217.701155211IPR001471AP2/ERF domain
CDDcd000182.92E-11155210No hitNo description
Gene3DG3DSA:3.30.730.103.3E-17155211IPR001471AP2/ERF domain
PfamPF008479.5E-10246296IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-17246306IPR016177DNA-binding domain
CDDcd000181.75E-25246306No hitNo description
SMARTSM003803.7E-31247310IPR001471AP2/ERF domain
PROSITE profilePS5103215.659247304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16247304IPR001471AP2/ERF domain
PRINTSPR003674.0E-6248259IPR001471AP2/ERF domain
PRINTSPR003674.0E-6286306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MWDLNESEEG CSTPIEFECD DEKGKRVGSV SNSSSSAVAV DDISEEELDG ERGKKKRGTP  60
PSKIFGFSMV GPGNGDEEQP VTRQFFPVDE SEMGGVAAAE NGSPNFPRAH WVGVKFYQTE  120
TLGNTGLAKP VDMVQQQQQQ PIKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  180
LGGFDTAHAA ARAYDRAAIK FRGVEADINF SLEDYESDLK QMTSLTKEEF VHVLRRQSTG  240
FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE IEAARAYDKA AIKCNGKDAV  300
TNFDPSIYED ELNSIESSDN AADHNLDLSL GGSSSKQGSR ELGDNRGQNS SSMQLDIDWQ  360
RHGLRPEVYL HDQLLYLVFV VNFFFFLCNM F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136400.0BT013640.1 Lycopersicon esculentum clone 132443F, mRNA sequence.
GenBankHQ5869510.0HQ586951.1 Solanum lycopersicum AP2 transcription factor SlAP2c mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339870.10.0PREDICTED: floral homeotic protein APETALA 2
SwissprotP479271e-126AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLM0ZXP90.0M0ZXP9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000102310.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-116AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]